hamolview.h File Reference

#include "hastl.h"
#include "habond.h"
#include "haatgroup.h"
#include "canvas3d.h"
#include "command.h"
#include "halinalg.h"
#include "hamolset.h"

Go to the source code of this file.

Classes

class Monitor

class ShadeDesc

Class to define a basic color. More...

class ShadeRef

Class that desribe position the basic color(shade) in the array of shades Shade[] and in array of colors Lut[]. More...

class HaMolView

Class for 3D representation of a set of molecules. More...

Defines

#define ForEachMol_VIEW   for(mol_itr=(GetMolSet()->HostMolecules).begin(); mol_itr != (GetMolSet()->HostMolecules).end(); mol_itr++)

#define ForEachChain_VIEW

#define ForEachResidue_VIEW

#define ForEachBack_VIEW

#define ZValid_v(z)   ((!UseSlabPlane() ) || ((z) < SlabValue()))

#define XValid_v(x)   (((x)>=0)&&((x)< pCanv->View.xmax))

#define YValid_v(y)   (((y)>=0)&&((y)< pCanv->View.ymax))

Typedefs

typedef void * PSItemPtr

Functions

unsigned int isqrt (unsigned int)

Variables

const long LOAD_AMBER_RESTART_TIMER_ID = 100301

const int ResidueAttr = 0x00

const int ChainAttr = 0x01

const int TempAttr = 0x02

const int ChargeAttr = 0x03

const int RibColInside = 0x01

const int RibColOutside = 0x02

const int RibColBoth = 0x03

const int BackCol = 0

const int BoxCol = 1

const int LabelCol = 2

const int FirstCol = 3

const int VOXORDER = 21

const int VOXORDER2 = VOXORDER*VOXORDER

const int VOXSIZE = VOXORDER2*VOXORDER

const int PickNone = 0x00

const int PickIdent = 0x01

const int PickDist = 0x02

const int PickAngle = 0x03

const int PickTorsn = 0x04

const int PickLabel = 0x05

const int PickMonit = 0x06

const int PickCentr = 0x07

const int PickMolConnect = 0x08

const int DefaultWide = 480

const int DefaultHigh = 480

const int RFRotateX = 0x0001

const int RFRotateY = 0x0002

const int RFRotateZ = 0x0004

const int RFZoom = 0x0008

const int RFTransX = 0x0010

const int RFTransY = 0x0020

const int RFTransZ = 0x0040

const int RFSlab = 0x0080

const int RFReSize = 0x0100

const int RFColour = 0x0200

const int RFRefresh = 0x0400

const int RFPoint1 = 0x1000

const int RFPoint2 = 0x2000

const int RFTrans = 0x0070

const int RFRotate = 0x0007

const int RFApply = 0x017F

const int RFDials = 0x00FF

const int RFMagnify = 0x0108

const int RFInitial = 0x01FF

const int RFPoint = 0x3000

const int MMRasMol = 0x00

const int MMInsight = 0x01

const int MMQuanta = 0x02

const int ViewLeft = 0

const int ViewRight = 1

HaMolView * CurMolView

Detailed Description

Classes to define 3D view of molecular set in HARLEM

based on RasMol2 Molecular Graphics Roger Sayle, August 1995 Version 2.6

Author:: Igor Kurnikov

Date:: 1998-2002

Define Documentation

#define ForEachChain_VIEW

Value:
for(mol_itr=(GetMolSet()->HostMolecules).begin(); mol_itr != (GetMolSet()->HostMolecules).end(); mol_itr++) \ for(chain=(*mol_itr)->GetFirstChain();chain;chain=(*mol_itr)->GetNextChain())

#define ForEachResidue_VIEW

Value:
for(mol_itr=(GetMolSet()->HostMolecules).begin(); mol_itr != (GetMolSet()->HostMolecules).end(); mol_itr++) \ for(chain=(*mol_itr)->GetFirstChain();chain;chain=(*mol_itr)->GetNextChain()) \ for( group=chain->GetFirstRes(); group; group=chain->GetNextRes() )

#define ForEachBack_VIEW

Value:
for(mol_itr=(GetMolSet()->HostMolecules).begin(); mol_itr != (GetMolSet()->HostMolecules).end(); mol_itr++) \ for(chain=(*mol_itr)->GetFirstChain();chain;chain=(*mol_itr)->GetNextChain()) \ for(bptr=chain->GetFirstBackB(); bptr; bptr= chain->GetNextBackB())

Generated on Tue Feb 17 02:03:10 2004 for harlem by

1.3.6


Classes
class	Monitor
class	ShadeDesc
	Class to define a basic color. More...
class	ShadeRef
	Class that desribe position the basic color(shade) in the array of shades Shade[] and in array of colors Lut[]. More...
class	HaMolView
	Class for 3D representation of a set of molecules. More...
Defines
#define	ForEachMol_VIEW for(mol_itr=(GetMolSet()->HostMolecules).begin(); mol_itr != (GetMolSet()->HostMolecules).end(); mol_itr++)
#define	ForEachChain_VIEW
#define	ForEachResidue_VIEW
#define	ForEachBack_VIEW
#define	ZValid_v(z) ((!UseSlabPlane() ) \|\| ((z) < SlabValue()))
#define	XValid_v(x) (((x)>=0)&&((x)< pCanv->View.xmax))
#define	YValid_v(y) (((y)>=0)&&((y)< pCanv->View.ymax))
Typedefs
typedef void *	PSItemPtr
Functions
unsigned int	isqrt (unsigned int)
Variables
const long	LOAD_AMBER_RESTART_TIMER_ID = 100301
const int	ResidueAttr = 0x00
const int	ChainAttr = 0x01
const int	TempAttr = 0x02
const int	ChargeAttr = 0x03
const int	RibColInside = 0x01
const int	RibColOutside = 0x02
const int	RibColBoth = 0x03
const int	BackCol = 0
const int	BoxCol = 1
const int	LabelCol = 2
const int	FirstCol = 3
const int	VOXORDER = 21
const int	VOXORDER2 = VOXORDER*VOXORDER
const int	VOXSIZE = VOXORDER2*VOXORDER
const int	PickNone = 0x00
const int	PickIdent = 0x01
const int	PickDist = 0x02
const int	PickAngle = 0x03
const int	PickTorsn = 0x04
const int	PickLabel = 0x05
const int	PickMonit = 0x06
const int	PickCentr = 0x07
const int	PickMolConnect = 0x08
const int	DefaultWide = 480
const int	DefaultHigh = 480
const int	RFRotateX = 0x0001
const int	RFRotateY = 0x0002
const int	RFRotateZ = 0x0004
const int	RFZoom = 0x0008
const int	RFTransX = 0x0010
const int	RFTransY = 0x0020
const int	RFTransZ = 0x0040
const int	RFSlab = 0x0080
const int	RFReSize = 0x0100
const int	RFColour = 0x0200
const int	RFRefresh = 0x0400
const int	RFPoint1 = 0x1000
const int	RFPoint2 = 0x2000
const int	RFTrans = 0x0070
const int	RFRotate = 0x0007
const int	RFApply = 0x017F
const int	RFDials = 0x00FF
const int	RFMagnify = 0x0108
const int	RFInitial = 0x01FF
const int	RFPoint = 0x3000
const int	MMRasMol = 0x00
const int	MMInsight = 0x01
const int	MMQuanta = 0x02
const int	ViewLeft = 0
const int	ViewRight = 1
HaMolView *	CurMolView