| AddNewAtom() | HaResidue | |
| alt_res_states | HaResidue | |
| AtomList() (defined in AtomList) | AtomList | [inline] |
| AtomList(const AtomList &ref_atset) (defined in AtomList) | AtomList | |
| AtomList(Expr *expr, HaMolSet *pmset) (defined in AtomList) | AtomList | |
| BuildFrom(Expr *expr, HaMolSet *pmset) | AtomList | |
| CalcPhiAngle(const HaResidue *prev, const HaResidue *curr) (defined in HaResidue) | HaResidue | [static] |
| CalcPsiAngle(const HaResidue *curr, const HaResidue *next) (defined in HaResidue) | HaResidue | [static] |
| CalcStdCrdSys(int fit_std_geom=FALSE) | HaResidue | |
| CheckStruct() | HaResidue | |
| col1 | HaResidue | |
| col2 | HaResidue | |
| CurAtomItr (defined in AtomList) | AtomList | |
| DeleteAtom(HaAtom *aptr) | AtomList | |
| DelSelAtoms() | AtomList | |
| FillRef(char *buf, int mode=0) const | HaResidue | [virtual] |
| flag | HaResidue | |
| GetAltChemState(int alt_state_idx) | HaResidue | |
| GetAltChemStateByAtName(const char *at_name) | HaResidue | |
| GetAtomByName(const char *atname) | HaResidue | |
| GetAtomByName(const char *atname) const | HaResidue | |
| GetAtomIterator() | AtomList | [inline, virtual] |
| GetFirstAtom() (defined in AtomList) | AtomList | |
| GetFullName() const | HaResidue | |
| GetHostChain() | HaResidue | [inline] |
| GetHostMol() | HaResidue | |
| GetHostMol() const | HaResidue | |
| GetID() const | AtomList | |
| GetName() const | HaResidue | |
| GetNameModifier() | HaResidue | [inline] |
| GetNAtoms() const | AtomList | [inline, virtual] |
| GetNextAtom() (defined in AtomList) | AtomList | |
| GetNextResInChain() | HaResidue | |
| GetNumAltStates() const | HaResidue | |
| GetPointIterator() | AtomList | [virtual] |
| GetPrevResInChain() | HaResidue | |
| GetPtNum() | AtomList | [inline, virtual] |
| GetRef() const | HaResidue | |
| GetResNameFromFullName(const char *res_full_name) | HaResidue | [static] |
| GetResNameInTable(const int j) | HaResidue | [static] |
| GetSerNo() const | HaResidue | [inline] |
| GetTemplate() | HaResidue | |
| GetUniqueAtomName(int elem_no) | HaResidue | |
| HaResidue() (defined in HaResidue) | HaResidue | |
| HaResidue(const HaResidue &ref_res) (defined in HaResidue) | HaResidue | |
| HaResidue(HaChain *new_phost_ch) (defined in HaResidue) | HaResidue | |
| HasBackBHBond(HaResidue *res2) | HaResidue | |
| id (defined in AtomList) | AtomList | |
| init_res_names_flag | HaResidue | [static] |
| InitResSynonym() | HaResidue | [static] |
| InitStdResNames() | HaResidue | [static] |
| insert | HaResidue | |
| InsertAtom(HaAtom *aptr) | AtomList | |
| InterpolResParams(const char *res_name_1, const char *res_name_2, double weight_1) | HaResidue | |
| IsAdenine() const (defined in HaResidue) | HaResidue | |
| IsAmino() const | HaResidue | |
| IsAminoNucleo() const (defined in HaResidue) | HaResidue | |
| IsBonded(HaResidue *res2) | HaResidue | |
| IsCoenzyme() const (defined in HaResidue) | HaResidue | |
| IsCysteine() const (defined in HaResidue) | HaResidue | |
| IsCytosine() const (defined in HaResidue) | HaResidue | |
| IsDNA() const (defined in HaResidue) | HaResidue | |
| IsGuanine() const (defined in HaResidue) | HaResidue | |
| IsHistidine() const (defined in HaResidue) | HaResidue | |
| IsIon() const (defined in HaResidue) | HaResidue | |
| IsMember(const HaAtom *aptr) const | AtomList | [virtual] |
| IsNucleo() const (defined in HaResidue) | HaResidue | |
| IsProline() const (defined in HaResidue) | HaResidue | |
| IsProtein() const (defined in HaResidue) | HaResidue | |
| IsPurine() const (defined in HaResidue) | HaResidue | |
| IsPyrimidine() const (defined in HaResidue) | HaResidue | |
| IsRNA() const (defined in HaResidue) | HaResidue | |
| IsSolvent() const (defined in HaResidue) | HaResidue | |
| IsTerm() const (defined in HaResidue) | HaResidue | |
| IsThymine() const (defined in HaResidue) | HaResidue | |
| IsWater() const (defined in HaResidue) | HaResidue | |
| IsWithinRadius(Vec3D *pptr, double limit) | PointCollection | |
| NameModifier | HaResidue | |
| operator<(const HaResidue &rhs) const (defined in HaResidue) | HaResidue | |
| operator==(const HaResidue &rhs) const (defined in HaResidue) | HaResidue | |
| phost_ch | HaResidue | |
| PrintPK() const | HaResidue | |
| refno | HaResidue | |
| ResetData() (defined in HaResidue) | HaResidue | [protected] |
| ResNames | HaResidue | [static] |
| ResSynonym | HaResidue | [static] |
| Selected() | HaResidue | |
| serno | HaResidue | |
| SetAltCharges(AltChemState *alt_res_st, double weight=1.0) | HaResidue | |
| SetChargesForPH(double pH_val) | HaResidue | |
| SetHostChain(HaChain *new_phost) | HaResidue | [inline] |
| SetID(const HaString &new_id) | AtomList | |
| SetName(const char *ptr, int max_len=0) | HaResidue | |
| SetNameModifier(const char *new_name_mod) (defined in HaResidue) | HaResidue | [inline] |
| SetParamFrom(const HaResidue &res_ref) | HaResidue | |
| SetStdCharges() | HaResidue | |
| SetStdPK() | HaResidue | |
| SetStdPK_G1() | HaResidue | |
| SetStdPKforAtName(const char *at_name, double std_pk_new) | HaResidue | |
| SetUniqueAtomNames() | HaResidue | |
| SplitResidue() (defined in HaResidue) | HaResidue | |
| std_crd_sys | HaResidue | |
| struc | HaResidue | |
| Superimpose(PointCollection &grp1, PointCollection &grp2, HaMat_double &rot_mat, HaVec_double &transl_vec, double &eps) | PointCollection | [static] |
| width | HaResidue | |
| ~AtomList() (defined in AtomList) | AtomList | [virtual] |
| ~HaResidue() (defined in HaResidue) | HaResidue | [virtual] |
