| AddElemDots(int elem, int density) (defined in HaMolView) | HaMolView | |
| AddMonitors(HaAtom *src, HaAtom *dst) (defined in HaMolView) | HaMolView | |
| Ambient (defined in HaMolView) | HaMolView | [static] |
| AminoColourAttrib() (defined in HaMolView) | HaMolView | |
| ApplyTransform() (defined in HaMolView) | HaMolView | |
| BackB | HaMolView | [static] |
| BackG (defined in HaMolView) | HaMolView | [static] |
| BackR (defined in HaMolView) | HaMolView | [static] |
| BoxB | HaMolView | [static] |
| BoxG (defined in HaMolView) | HaMolView | [static] |
| BoxR (defined in HaMolView) | HaMolView | [static] |
| BroadcastCurrAtom() | HaMolView | |
| BuildHashTable() | HaMolView | |
| CalcRotCenter(int sel_atoms=FALSE) | HaMolView | |
| CalculateDotSurface(int density) (defined in HaMolView) | HaMolView | |
| CartoonHeight (defined in HaMolView) | HaMolView | |
| CenterSelected() | HaMolView | |
| CenX (defined in HaMolView) | HaMolView | |
| CenY (defined in HaMolView) | HaMolView | |
| CenZ | HaMolView | |
| CheckKinemageChain(HaAtom *src, HaAtom *dst, HaChain *chain) (defined in HaMolView) | HaMolView | [protected] |
| ClampShiftVal(int ival, double value) | HaMolView | [protected] |
| ClearBuffers() (defined in HaMolView) | HaMolView | |
| ClearImage() (defined in HaMolView) | HaMolView | [inline, virtual] |
| ClipboardImage() (defined in HaMolView) | HaMolView | [inline, virtual] |
| ClipVectBond(HaAtom *, HaAtom *) (defined in HaMolView) | HaMolView | [protected] |
| ClipVectSphere(HaAtom *) (defined in HaMolView) | HaMolView | [protected] |
| Colour2Shade(const int x) | HaMolView | [inline, static] |
| ColourBackAttrib(int r, int g, int b) (defined in HaMolView) | HaMolView | |
| ColourBackNone() (defined in HaMolView) | HaMolView | |
| ColourBondAttrib(int r, int g, int b) (defined in HaMolView) | HaMolView | |
| ColourBondNone() (defined in HaMolView) | HaMolView | |
| ColourDotsAttrib(int r, int g, int b) (defined in HaMolView) | HaMolView | |
| ColourDotsPotential() (defined in HaMolView) | HaMolView | |
| ColourHBondAttrib(int hbonds, int r, int g, int b) (defined in HaMolView) | HaMolView | |
| ColourHBondNone(int hbonds) (defined in HaMolView) | HaMolView | |
| ColourHBondType() (defined in HaMolView) | HaMolView | |
| ColourMonitAttrib(int r, int g, int b) (defined in HaMolView) | HaMolView | |
| ColourMonitNone() (defined in HaMolView) | HaMolView | |
| ColourRibbonAttrib(int flag, int r, int g, int b) (defined in HaMolView) | HaMolView | |
| ColourRibbonNone(int flag) (defined in HaMolView) | HaMolView | |
| ComputeRevColourMap() | HaMolView | |
| ConnectObject(Object3D *pObj) (defined in HaMolView) | HaMolView | |
| CountPSItems() (defined in HaMolView) | HaMolView | [protected] |
| CPKColourAttrib() (defined in HaMolView) | HaMolView | |
| CreateImage() (defined in HaMolView) | HaMolView | |
| CreateMonitor(Long src, Long dst) (defined in HaMolView) | HaMolView | |
| CurRX | HaMolView | |
| CurRY | HaMolView | |
| CurRZ | HaMolView | |
| CurSlabValue | HaMolView | |
| CurTX | HaMolView | |
| CurTY | HaMolView | |
| CurZoom | HaMolView | |
| debug_level (defined in HaMolView) | HaMolView | |
| DefaultLabels(int enable) (defined in HaMolView) | HaMolView | |
| DefaultRepresentation() (defined in HaMolView) | HaMolView | |
| DefineColourMap() | HaMolView | [static] |
| DefineLabels(const char *label) (defined in HaMolView) | HaMolView | |
| DefineShade(unsigned char r, unsigned char g, unsigned char b) | HaMolView | [static] |
| DeleteDotSurfaces() (defined in HaMolView) | HaMolView | |
| DeleteLabels() (defined in HaMolView) | HaMolView | |
| DeleteMonitors() (defined in HaMolView) | HaMolView | |
| DepthSort(PSItemPtr *data, char *type, int count) (defined in HaMolView) | HaMolView | [protected] |
| DetermineIRISSizes(Long *rowstart, short *rowsize, int *min, int *max) (defined in HaMolView) | HaMolView | [protected] |
| DisableBackbone() (defined in HaMolView) | HaMolView | |
| DisableSpacefill() (defined in HaMolView) | HaMolView | |
| DisableWireframe() (defined in HaMolView) | HaMolView | |
| DisplayBackbone() | HaMolView | |
| DisplayBoxes() | HaMolView | |
| DisplayContourSurf() (defined in HaMolView) | HaMolView | |
| DisplayCylinder(int x1, int y1, int z1, int x2, int y2, int z2, int c1, int c2, int rad) (defined in HaMolView) | HaMolView | |
| DisplayDotSurfaces() (defined in HaMolView) | HaMolView | |
| DisplayDoubleBonds() (defined in HaMolView) | HaMolView | |
| DisplayETBestPath() (defined in HaMolView) | HaMolView | |
| DisplayHBonds(int mode) | HaMolView | |
| DisplayLabels() (defined in HaMolView) | HaMolView | |
| DisplayMonitors() (defined in HaMolView) | HaMolView | |
| DisplayOnScreenInfo() | HaMolView | |
| DisplayPickedAtoms() | HaMolView | |
| DisplayRibbon(HaChain *) | HaMolView | |
| DisplaySpaceFill() | HaMolView | |
| DisplayWireframe() | HaMolView | |
| DrawAtoms (defined in HaMolView) | HaMolView | |
| DrawAxes (defined in HaMolView) | HaMolView | |
| DrawBestPath (defined in HaMolView) | HaMolView | |
| DrawBetaArrows (defined in HaMolView) | HaMolView | |
| DrawBonds (defined in HaMolView) | HaMolView | |
| DrawBoundBox (defined in HaMolView) | HaMolView | |
| DrawContourSurf (defined in HaMolView) | HaMolView | |
| DrawDots (defined in HaMolView) | HaMolView | |
| DrawDoubleBonds (defined in HaMolView) | HaMolView | |
| DrawFrame() | HaMolView | |
| DrawLabels (defined in HaMolView) | HaMolView | |
| DrawMonitDistance (defined in HaMolView) | HaMolView | |
| DrawRibbon (defined in HaMolView) | HaMolView | |
| DrawSolidSurfaces (defined in HaMolView) | HaMolView | |
| DrawUnitCell (defined in HaMolView) | HaMolView | |
| DScale | HaMolView | |
| EnableBackbone(int mask, double rad) (defined in HaMolView) | HaMolView | |
| EnableWireframe(int mask, double rad) (defined in HaMolView) | HaMolView | |
| EncodeEPSFPixel(int val, int col) (defined in HaMolView) | HaMolView | [protected] |
| ExecuteColourCommand(CmdParser &cmd_pr) (defined in HaMolView) | HaMolView | |
| ExecuteCommand(CmdParser &cmd_pr) (defined in HaMolView) | HaMolView | [virtual] |
| ExecuteSetCommand(CmdParser &cmd_pr) (defined in HaMolView) | HaMolView | |
| FakeSpecular (defined in HaMolView) | HaMolView | [static] |
| FBufX (defined in HaMolView) | HaMolView | [protected] |
| FBufY | HaMolView | [protected] |
| FetchPSItems(PSItemPtr *, char *) (defined in HaMolView) | HaMolView | [protected] |
| FillCurrAtomRef(char *buf) (defined in HaMolView) | HaMolView | |
| FindDepth(PSItemPtr item, int type) (defined in HaMolView) | HaMolView | [protected] |
| FlushBMPBuffer() (defined in HaMolView) | HaMolView | [protected] |
| FlushBMPPackets() (defined in HaMolView) | HaMolView | [protected] |
| FlushIRISBuffer() (defined in HaMolView) | HaMolView | [protected] |
| FlushIRISPacket() (defined in HaMolView) | HaMolView | [protected] |
| FlushPICTBuffer() (defined in HaMolView) | HaMolView | [protected] |
| FlushPICTPacket() (defined in HaMolView) | HaMolView | [protected] |
| FlushRastRLE() (defined in HaMolView) | HaMolView | [protected] |
| FormatLabel(HaChain *chain, HaResidue *group, HaAtom *aptr, const char *label, char *ptr) (defined in HaMolView) | HaMolView | |
| FreeElemDots() (defined in HaMolView) | HaMolView | |
| GetColorIdx(unsigned char r, unsigned char g, unsigned char b) | HaMolView | [static] |
| GetImageRadius() (defined in HaMolView) | HaMolView | |
| GetImageSize() (defined in HaMolView) | HaMolView | |
| GetMolSet() | HaMolView | |
| GetTransfCoord(const double x_abs, const double y_abs, const double z_abs, double &x_tr, double &y_tr, double &z_tr) | HaMolView | |
| GroupsColourAttrib() (defined in HaMolView) | HaMolView | |
| HaMolView() (defined in HaMolView) | HaMolView | |
| HashTable (defined in HaMolView) | HaMolView | |
| HBondMode (defined in HaMolView) | HaMolView | |
| HetaGroups (defined in HaMolView) | HaMolView | |
| host_mol_set (defined in HaMolView) | HaMolView | |
| Hydrogens (defined in HaMolView) | HaMolView | |
| ideltx (defined in HaMolView) | HaMolView | |
| idelty | HaMolView | |
| IdentifyAtom(int xpos, int ypos) | HaMolView | |
| InitElemDots() (defined in HaMolView) | HaMolView | |
| InitializeRenderer() (defined in HaMolView) | HaMolView | |
| InitializeTables() (defined in HaMolView) | HaMolView | |
| InitialTransform() | HaMolView | |
| InitX | HaMolView | |
| InitY | HaMolView | |
| IsCPKColour(HaAtom *aptr) (defined in HaMolView) | HaMolView | |
| IsShadeDefined(unsigned char r, unsigned char g, unsigned char b) | HaMolView | [static] |
| KinemageFlag (defined in HaMolView) | HaMolView | |
| LabB | HaMolView | [static] |
| LabelOptFlag (defined in HaMolView) | HaMolView | |
| LabG (defined in HaMolView) | HaMolView | [static] |
| LabR (defined in HaMolView) | HaMolView | [static] |
| LastRX (defined in HaMolView) | HaMolView | |
| LastRY (defined in HaMolView) | HaMolView | |
| LastRZ | HaMolView | |
| LastTX (defined in HaMolView) | HaMolView | |
| LastTY | HaMolView | |
| m_screen_transform | HaMolView | |
| min_color_map | HaMolView | |
| MonitList (defined in HaMolView) | HaMolView | |
| MonoColourAttrib(int r, int g, int b) (defined in HaMolView) | HaMolView | |
| MouseMode (defined in HaMolView) | HaMolView | [static] |
| MouseMove(int status, int dx, int dy) (defined in HaMolView) | HaMolView | [protected] |
| OpenDisplay(int, int) (defined in HaMolView) | HaMolView | [static] |
| Orig | HaMolView | |
| OutputEPSFByte(int val) (defined in HaMolView) | HaMolView | [protected] |
| OutputKinemageVector(HaAtom *src, HaAtom *dst, int col) (defined in HaMolView) | HaMolView | [protected] |
| pCanv | HaMolView | |
| PickAtom(int, int, int) (defined in HaMolView) | HaMolView | |
| PointX | HaMolView | |
| PointY | HaMolView | |
| PrepareTransform() (defined in HaMolView) | HaMolView | |
| PrintImage() (defined in HaMolView) | HaMolView | [inline, virtual] |
| ProbeRadius | HaMolView | |
| ProcessBMPPacket() (defined in HaMolView) | HaMolView | [protected] |
| ReAllocBuffers() (defined in HaMolView) | HaMolView | |
| ReDrawFlag (defined in HaMolView) | HaMolView | |
| RefreshScreen() (defined in HaMolView) | HaMolView | [inline, virtual] |
| RenderFrame() | HaMolView | |
| ResetRenderer() (defined in HaMolView) | HaMolView | |
| ResetTransform() (defined in HaMolView) | HaMolView | |
| ResetView() (defined in HaMolView) | HaMolView | |
| ReSizeScreen() (defined in HaMolView) | HaMolView | |
| RestrictSelected() | HaMolView | |
| rev_color_map | HaMolView | |
| Rot | HaMolView | |
| Scale | HaMolView | |
| ScaleColourAttrib(int attr) | HaMolView | |
| ScaleColourMap(int count) | HaMolView | |
| ScaleCount | HaMolView | [static] |
| ScaleRef | HaMolView | [static] |
| SetAtomScreenRadVal(double rad) | HaMolView | |
| SetAtomScreenRadVdW() | HaMolView | |
| SetHBondStatus(int hbonds, int enable, double rad) (defined in HaMolView) | HaMolView | |
| SetImageSize(int new_ImageSize) (defined in HaMolView) | HaMolView | |
| SetMouseMode(int) (defined in HaMolView) | HaMolView | [static] |
| SetPickMode(int) (defined in HaMolView) | HaMolView | |
| SetRadiusTemperature() (defined in HaMolView) | HaMolView | |
| SetRefreshScreen() (defined in HaMolView) | HaMolView | |
| SetRibbonCartoons() (defined in HaMolView) | HaMolView | |
| SetRibbonStatus(int enable, int flag, double width) (defined in HaMolView) | HaMolView | |
| SetShadeLutEntries(int shade_idx) | HaMolView | [static] |
| SetSlabInten(int new_SlabInten) (defined in HaMolView) | HaMolView | [inline] |
| SetSlabMode(int new_SlabMode) (defined in HaMolView) | HaMolView | [inline] |
| SetSlabValue(int new_SlabValue) (defined in HaMolView) | HaMolView | [inline] |
| SetSliceValue(int new_SliceValue) (defined in HaMolView) | HaMolView | [inline] |
| SetStereoMode(int) (defined in HaMolView) | HaMolView | |
| SetTraceTemperature() (defined in HaMolView) | HaMolView | |
| SetUseSlabPlane(int new_UseSlabPlane) (defined in HaMolView) | HaMolView | [inline] |
| SetZOffset(int new_ZOffset) (defined in HaMolView) | HaMolView | [inline] |
| Shade | HaMolView | [static] |
| Shade2Colour(const int x) | HaMolView | [inline, static] |
| ShapelyColourAttrib() (defined in HaMolView) | HaMolView | |
| SlabMode() (defined in HaMolView) | HaMolView | [inline] |
| SlabValue() (defined in HaMolView) | HaMolView | [inline] |
| SliceValue() (defined in HaMolView) | HaMolView | [inline] |
| SolventDots (defined in HaMolView) | HaMolView | |
| SpecPower (defined in HaMolView) | HaMolView | [static] |
| SSBondMode (defined in HaMolView) | HaMolView | |
| StereoAngle (defined in HaMolView) | HaMolView | |
| StereoView (defined in HaMolView) | HaMolView | [protected] |
| StructColourAttrib() (defined in HaMolView) | HaMolView | |
| TestAtomProximity(HaAtom *ptr, int xpos, int ypos) | HaMolView | |
| TestDot(double x, double y, double z, bool solvent_access) (defined in HaMolView) | HaMolView | |
| TransferImage() (defined in HaMolView) | HaMolView | [inline, virtual] |
| UpdateThisView(long lHint=0) (defined in HaMolView) | HaMolView | [virtual] |
| UseBackFade (defined in HaMolView) | HaMolView | [static] |
| UseClipping (defined in HaMolView) | HaMolView | |
| UseDepthCue (defined in HaMolView) | HaMolView | |
| UseHourGlass (defined in HaMolView) | HaMolView | [static] |
| UseLabelCol (defined in HaMolView) | HaMolView | |
| UseOutLine (defined in HaMolView) | HaMolView | |
| UseScreenClip (defined in HaMolView) | HaMolView | |
| UseSlabPlane() (defined in HaMolView) | HaMolView | [inline] |
| UseStereo (defined in HaMolView) | HaMolView | |
| UseTransparent (defined in HaMolView) | HaMolView | |
| WrapShiftVal(int iaxis, double value) | HaMolView | [protected] |
| WriteBMPCode(int val) (defined in HaMolView) | HaMolView | [protected] |
| WriteBMPData(int output) (defined in HaMolView) | HaMolView | [protected] |
| WriteBMPFile(const char *name) (defined in HaMolView) | HaMolView | |
| WriteByte(int) (defined in HaMolView) | HaMolView | [protected] |
| WriteEPSFFile(const char *name, int col, int compr) (defined in HaMolView) | HaMolView | |
| WriteGIFCode(int code) (defined in HaMolView) | HaMolView | [protected] |
| WriteGIFFile(const char *name) (defined in HaMolView) | HaMolView | |
| WriteImageFile(const char *name, int type) (defined in HaMolView) | HaMolView | |
| WriteIRISCode(int val) (defined in HaMolView) | HaMolView | [protected] |
| WriteIRISData() (defined in HaMolView) | HaMolView | [protected] |
| WriteIRISFile(const char *name) (defined in HaMolView) | HaMolView | |
| WriteIRISHeader(Long *rowstart, short *rowsize, int min, int max) (defined in HaMolView) | HaMolView | [protected] |
| WriteKinemageBonds(HaChain *chain) (defined in HaMolView) | HaMolView | [protected] |
| WriteKinemageData() (defined in HaMolView) | HaMolView | [protected] |
| WriteKinemageDots() (defined in HaMolView) | HaMolView | [protected] |
| WriteKinemageFile(const char *name) (defined in HaMolView) | HaMolView | |
| WriteKinemageLabels(HaChain *chain) (defined in HaMolView) | HaMolView | [protected] |
| WriteKinemageRibbons(HaChain *chain) (defined in HaMolView) | HaMolView | [protected] |
| WriteKinemageSpheres(HaChain *chain) (defined in HaMolView) | HaMolView | [protected] |
| WriteLSBLong(unsigned int) (defined in HaMolView) | HaMolView | [protected] |
| WriteLSBShort(int) (defined in HaMolView) | HaMolView | [protected] |
| WriteMolScriptFile(const char *name) (defined in HaMolView) | HaMolView | |
| WriteMSBLong(unsigned int) (defined in HaMolView) | HaMolView | [protected] |
| WriteMSBShort(int) (defined in HaMolView) | HaMolView | [protected] |
| WritePICTCode(int val) (defined in HaMolView) | HaMolView | [protected] |
| WritePICTData() (defined in HaMolView) | HaMolView | [protected] |
| WritePICTFile(const char *name) (defined in HaMolView) | HaMolView | |
| WritePOVRayFile(const char *name) (defined in HaMolView) | HaMolView | |
| WritePPMFile(const char *name, int raw) (defined in HaMolView) | HaMolView | |
| WritePPMWord(int i) (defined in HaMolView) | HaMolView | [protected] |
| WritePSItems(PSItemPtr *, char *, int) (defined in HaMolView) | HaMolView | [protected] |
| WriteRastData(int output) (defined in HaMolView) | HaMolView | [protected] |
| WriteRastFile(const char *name, int encode) (defined in HaMolView) | HaMolView | |
| WriteRastRLECode(int val) (defined in HaMolView) | HaMolView | [protected] |
| WriteRastRLEPad() (defined in HaMolView) | HaMolView | [protected] |
| WriteScriptAtoms() (defined in HaMolView) | HaMolView | [protected] |
| WriteScriptBackbone() (defined in HaMolView) | HaMolView | [protected] |
| WriteScriptBonds() (defined in HaMolView) | HaMolView | [protected] |
| WriteScriptFile(const char *name) (defined in HaMolView) | HaMolView | |
| WriteScriptHBonds(char *obj) (defined in HaMolView) | HaMolView | [protected] |
| WriteScriptLabels() (defined in HaMolView) | HaMolView | [protected] |
| WriteScriptMonitors() (defined in HaMolView) | HaMolView | [protected] |
| WriteScriptRibbons() (defined in HaMolView) | HaMolView | [protected] |
| WriteVectColour(int col) (defined in HaMolView) | HaMolView | [protected] |
| WriteVectDots() (defined in HaMolView) | HaMolView | [protected] |
| WriteVectLabels() (defined in HaMolView) | HaMolView | [protected] |
| WriteVectMonitors() (defined in HaMolView) | HaMolView | [protected] |
| WriteVectPSFile(const char *name) (defined in HaMolView) | HaMolView | |
| WriteVectSphere(PSItemPtr *data, char *type, int index) (defined in HaMolView) | HaMolView | [protected] |
| WriteVectStick(HaAtom *src, HaAtom *dst, int col, int rad) (defined in HaMolView) | HaMolView | [protected] |
| WriteVectWire(HaAtom *src, HaAtom *dst, int col, int dash) (defined in HaMolView) | HaMolView | [protected] |
| WriteVRMLAtoms() | HaMolView | |
| WriteVRMLColour(int indent, int shade) | HaMolView | |
| WriteVRMLDots() (defined in HaMolView) | HaMolView | |
| WriteVRMLFile(const char *name) (defined in HaMolView) | HaMolView | |
| WriteVRMLLine(int src, int dst, int shade, int *flag) (defined in HaMolView) | HaMolView | |
| WriteVRMLTriple(double x, double y, double z) | HaMolView | |
| WriteVRMLWireframe() (defined in HaMolView) | HaMolView | |
| XOffset (defined in HaMolView) | HaMolView | |
| YOffset (defined in HaMolView) | HaMolView | |
| ZOffset() (defined in HaMolView) | HaMolView | [inline] |
| ZoneBoth | HaMolView | [static] |
| Zoom | HaMolView | |
| ~HaMolView() (defined in HaMolView) | HaMolView | [virtual] |
