| AtomList() (defined in AtomList) | AtomList | [inline] |
| AtomList(const AtomList &ref_atset) (defined in AtomList) | AtomList | |
| AtomList(Expr *expr, HaMolSet *pmset) (defined in AtomList) | AtomList | |
| BuildFrom(Expr *expr, HaMolSet *pmset) | AtomList | |
| ChemGroup() (defined in ChemGroup) | ChemGroup | |
| ChemGroup(HaMolSet *new_phost_mset, const char *new_id="") (defined in ChemGroup) | ChemGroup | |
| CurAtomItr (defined in AtomList) | AtomList | |
| DeleteAtom(HaAtom *aptr) | AtomList | |
| DelSelAtoms() | AtomList | |
| FillRef(char *buf) const | ChemGroup | |
| GetAtomIterator() | AtomList | [inline, virtual] |
| GetFirstAtom() (defined in AtomList) | AtomList | |
| GetID() const | AtomList | |
| GetIDFromRef(const HaString &buf) (defined in ChemGroup) | ChemGroup | [static] |
| GetNAtoms() const | AtomList | [inline, virtual] |
| GetNextAtom() (defined in AtomList) | AtomList | |
| GetPointIterator() | AtomList | [virtual] |
| GetProtect() const | ChemGroup | |
| GetPtNum() | AtomList | [inline, virtual] |
| HaMolSet (defined in ChemGroup) | ChemGroup | [friend] |
| id (defined in AtomList) | AtomList | |
| InsertAtom(HaAtom *aptr) | AtomList | |
| IsMember(const HaAtom *aptr) const | AtomList | [virtual] |
| IsWithinRadius(Vec3D *pptr, double limit) | PointCollection | |
| phost_mset (defined in ChemGroup) | ChemGroup | [protected] |
| Print_info(ostream &sout, const int level) const (defined in ChemGroup) | ChemGroup | |
| protect (defined in ChemGroup) | ChemGroup | [protected] |
| SetID(const HaString &new_id) | AtomList | |
| SetProtect(const double new_protect) (defined in ChemGroup) | ChemGroup | |
| Superimpose(PointCollection &grp1, PointCollection &grp2, HaMat_double &rot_mat, HaVec_double &transl_vec, double &eps) | PointCollection | [static] |
| ~AtomList() (defined in AtomList) | AtomList | [virtual] |
| ~ChemGroup() (defined in ChemGroup) | ChemGroup | [virtual] |
